rs51718635 SNP Detail

Summary

• ID
  rs51718635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGGGTC AAACACGCAT
  AAATTTCCTG TAAAATTGAG GGAGGGCATA TAGAGAGCCT TGAACTTGGG GTGAACTTTG
  AGATTCTGTT TAGTTACGTT TAGCATTATC GAGATCACTA ATGCATTGTG CCATGTGTCT
  AACAAGGCCT ACTTAGAGAT TCCAAGGCAC CATGGGAAGG ATAAGCCTTG TAAGAGGATC
  R
  GGCTCCTGTC CTCATGCCTC ACCGCCTCCC TCGGAGACAC ATGGTCACTC AATACTAAAT
  AGACGCAAAG GCGGTGCCCC CCATTTGCTG GCAAGACAGC AGCAGCCATA CTTTAGGAAG
  AAAATAGGTT TAACTTGTTC TGAAGTGACA TTTATTTTAA GCTTTTAGAA TTTTATCTGT
  ACTAGAAGTC ATCAAAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132681555	ENSMUSSNP6094365	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323821030	CHEV_11_96406625	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51718635					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436137 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1064 bp proximal
Rr252638	regulatory region 252638	1538 bp distal
Rr252639	regulatory region 252639	465 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	588 bp downstream
Tssr104544	transcription start site region 104544	62 bp upstream
Tssr104545	transcription start site region 104545	115 bp upstream
Tssr104546	transcription start site region 104546	123 bp upstream
Tssr104547	transcription start site region 104547	165 bp upstream
Tssr104548	transcription start site region 104548	259 bp upstream
Tssr104549	transcription start site region 104549	272 bp upstream
Tssr104550	transcription start site region 104550	330 bp upstream
Tssr104551	transcription start site region 104551	358 bp upstream
Tssr104552	transcription start site region 104552	379 bp upstream
Tssr104553	transcription start site region 104553	1716 bp upstream