rs51719539 SNP Detail

Summary

• ID
  rs51719539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44662366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCATTAT GATTCATAAC
  AGTGGCAAAA TTATAGTGAT GAAGTAACAA CAAAAATAAT TTTATGGTTA GGGGCAGGAG
  ATGTCACTGC AACATGAGGA AGTGTATCAA AGAGTCACAG CATTGGGAAG GTTGAGAACC
  ACTGCTCTAG AGGGACAGGG GTTGGAGAAG TTGAGCAGCT ACCACTATAT CCATACACCC
  R
  CCACTGGAGC AATGGCTATC CTTAGGAGGG CCAATAATTT CTTTCCTTGC TATTGCCAGA
  AACGTCTCAG AAAAGAAGCA GTTAACTGAA ACCCAAGGCT CCTGTTTATA AACCAAGGAG
  TCCCTTATAC TTCTTATCAT TTTTTCTGTT CACTTATTTA CTATATGTTG GAGTTATAGC
  ATCATCTATT GAAAAAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61784002	NES17519015	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51719539					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61784002	NES17519015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44662366 () rs orientation: forward

Symbol	Name	Function Class
Gm40930	predicted gene, 40930	185 bp downstream
Gm47792	predicted gene, 47792	568 bp upstream
Rr271968	regulatory region 271968	635 bp proximal
Rr276099	regulatory region 276099	634 bp proximal
Rr279318	regulatory region 279318	1813 bp proximal
Rr283666	regulatory region 283666	1308 bp distal
Rr403740	regulatory region 403740	1464 bp downstream