rs51720407 SNP Detail

Summary

• ID
  rs51720407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54411929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GTAGTCCCTG AAGACAGCCG
  R
  AGTACCTGGG CATGATCTCT TTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62393476	NES17236821	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G		A	G	G	G		G
ss139557164	ENSMUSSNP4404185	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss324635224	CHEV_14_54794147	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51720407					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393476	NES17236821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54411929 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	861 bp distal
Rr492148	regulatory region 492148	1882 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	1799 bp upstream
Traj42	T cell receptor alpha joining 42	1301 bp upstream
Traj43	T cell receptor alpha joining 43	270 bp upstream
Traj44	T cell receptor alpha joining 44	722 bp downstream
Traj45	T cell receptor alpha joining 45	1582 bp downstream
Tssr125558	transcription start site region 125558	938 bp downstream
Tssr125559	transcription start site region 125559	918 bp downstream
Tssr125560	transcription start site region 125560	882 bp downstream
Tssr125561	transcription start site region 125561	868 bp downstream
Tssr125562	transcription start site region 125562	71 bp downstream
Tssr125563	transcription start site region 125563	128 bp upstream
Tssr125564	transcription start site region 125564	393 bp upstream
Tssr125565	transcription start site region 125565	482 bp upstream
Tssr125566	transcription start site region 125566	1502 bp upstream
Tssr125567	transcription start site region 125567	1736 bp upstream
Tssr125568	transcription start site region 125568	1755 bp upstream
Tssr125569	transcription start site region 125569	1781 bp upstream
Tssr125570	transcription start site region 125570	1799 bp upstream