rs51720462 SNP Detail

Summary

• ID
  rs51720462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44398042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCCCAG AGAAGGCCGA
  ATAACGGTGA GCAATTAGGG GGATGGACTA ATCAGGCGTG TCGCTCAGGC TTCTGGGAAA
  TGGAGTTTCC AGCAGGGCAC AGCTTGTCCG GATGCCCTGT ATTAGAGGAA ATAGGCCGCG
  TCTGCTCGCT GCTGTCGCAC GGCCGGTGGG GGATGCGCGC GCAGCCCCTC CTTCACCCTC
  Y
  CTCCCCGGAA GTTTCTGCGG GGCAACTGTA AAGGTGAGTC CAAGTTTCTG CTCCGGATCG
  GAGTGAGAGT CCGGGCCGTG AGAAACCCCG GCGCCCACGG CTTTTTCACA AGTACAGTGA
  TGAGGAGCCG CTCGCCCGGC AGCCTGTGAC GTCACTGCCT GAGGAAGGCG GAGGCCGACC
  AAGGCTGGGG TTCGGGGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149120970	ENSMUSSNP3376883	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51720462					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44398042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18993	CpG island 18993	within coordinates
Rr400296	regulatory region 400296	22 bp downstream
Tssr66420	transcription start site region 66420	58 bp downstream
Tssr66421	transcription start site region 66421	within coordinates
Tssr66422	transcription start site region 66422	22 bp upstream
Tssr66423	transcription start site region 66423	288 bp upstream
Tssr66424	transcription start site region 66424	370 bp upstream
Vrk3	vaccinia related kinase 3	7 bp upstream
Zfp473	zinc finger protein 473	1 bp upstream