rs51720643 SNP Detail

Summary

• ID
  rs51720643
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43813708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAA ACTTTGACCG TGCTGTGGAT
  W
  CTGTGCCTCT TAGTACGCGT AGTCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62740073	NES17341068	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	T	A	A	T	T	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51720643					SNP	A	A	T	A	A	T	A	A	T	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62740073	NES17341068	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43813708 () rs orientation: forward

Symbol	Name	Function Class
Mep1a	meprin 1 alpha	5 bp upstream
Rr339847	regulatory region 339847	1307 bp distal
Rr339848	regulatory region 339848	507 bp distal
Rr339849	regulatory region 339849	107 bp distal
Tssr148121	transcription start site region 148121	78 bp upstream
Tssr148122	transcription start site region 148122	11 bp upstream
Tssr148123	transcription start site region 148123	1196 bp downstream
Tssr148124	transcription start site region 148124	1450 bp downstream
Tssr148125	transcription start site region 148125	1461 bp downstream
Tssr148126	transcription start site region 148126	1511 bp downstream