rs51720774 SNP Detail

Summary

• ID
  rs51720774
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58111985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT TCACACAGTG CTGAAGAGAA
  A
  GATTCTCAGC ACCCTACACT ACCCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132192031	ENSMUSSNP5483090	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323688640	CHEV_11_58034661	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51720774					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58111985 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	mRNA-UTR
Tssr101708	transcription start site region 101708	969 bp downstream
Tssr101709	transcription start site region 101709	649 bp downstream
Tssr101710	transcription start site region 101710	631 bp downstream
Tssr101711	transcription start site region 101711	445 bp downstream
Tssr101712	transcription start site region 101712	404 bp downstream
Tssr101713	transcription start site region 101713	85 bp downstream
Tssr101714	transcription start site region 101714	44 bp downstream