rs51721885 SNP Detail

Summary

• ID
  rs51721885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46856544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATCTGT AATGGGATCC
  GATGCCTTCT TCTGGTGTGT CTTAAGACAG TTACTCATAT AAATAAAATA AATGAATCTT
  TAAAACAGAA ACCAAACTGA ACATTCGTTA GCACAGAACT GCTCAGTAAA AAAAATGTAT
  TACAGCATAA TCTATTCTTA GATGGGGACA GTAGGTTGCA GGCATCAGAT AAGAAAGGTT
  R
  TTAAAGCAGA ATATTAATGA AAATAAAACG ACTAGGGAAA GGTATGTGTG ATTTGAAACA
  GTGCAATGGA GAGAGTAAAA TAGAAGGTGT ACCTGGATAA AAGAACCAGT TATCCAGGCA
  GGAGTCATGT CAGGGTGCAC GGACAGGAGG CAAGCAGAAG AAAGGAGGAG TCATATAAGA
  TGTGAACTTC TGTGTGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62759006	NES17342662	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51721885					SNP	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62759006	NES17342662	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46856544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9232	CpG island 9232	339 bp proximal
Cul9	cullin 9	within coordinates
Rr527757	regulatory region 527757	97 bp proximal
Rr527758	regulatory region 527758	760 bp proximal
Rr527759	regulatory region 527759	1306 bp proximal
Tssr148330	transcription start site region 148330	657 bp downstream