rs51724096 SNP Detail

Summary

• ID
  rs51724096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112573072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGTGTT GGAAGAAAAG
  AACCAACTTC TGAAAGTGAT CCTCTGACTT CCACAGATAT GCACTCATAC ACGTGCACAC
  ATCTGTACAC ACACACACAC ACGTGCACAC ACACACACAC ACACACACAC ACGTACACAC
  ACACATACAC ATAAATGTAA GAAGATGTTT GAAAAAAATA TTTCTGGGTC ACACCTTTTA
  Y
  AGATGAGGTC AGAGAAGTAG TCAATTGCAG ATCGCTTCCC TCTGATGTTA CTTCAGTGTC
  GTCTGTTGAC ATTGTTGGCA GTTTAAGAGC TGGTCACTCT GAGTGAGCGT CAAGAATAAT
  AAATGTTAAT GCTGCTCAGG CTGGGGGATT GCTCATCCCA GTACACGTGC TAAGCATGAG
  TTCAAACCCC AGCACCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696254	NES15540347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51724096					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696254	NES15540347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112573072 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Rr395952	regulatory region 395952	1659 bp upstream
Rr486369	regulatory region 486369	588 bp distal
Rr486370	regulatory region 486370	1395 bp proximal
Rr486371	regulatory region 486371	1495 bp proximal
Tssr121117	transcription start site region 121117	1610 bp upstream
Tssr121118	transcription start site region 121118	1689 bp upstream
Tssr124051	transcription start site region 124051	1501 bp downstream