rs51724326 SNP Detail

Summary

• ID
  rs51724326
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156055538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCTTAG CACAATCCCA
  TCTTAGCAAG TGGGGAGGGC TTGTGAGGGG CAGAGTGATG CTGACTGTGA CCCTCCTGCC
  ACAGAGCTCT CAGCTGGAGA AGGAGGGAAG TTTTCAATAA AATGACAATT GAAGTTTCTA
  TCTGACCCTG GATAAGACTT GCGCTACCTA GAAAAGAGAG ACTGTTTTGA AAGTAATGAT
  W
  AGATAAGAAT GATAAAAGCC GGGAGAGCCT GGAAAAGCTG CCAATTTTAA TCCAGGTTTA
  GGGGAGAATA TCATATGATA GCTGGTTTGT GGGATCACGT GTGAGAAATT AAAGGTTGCA
  TCTAAAGAGA CTCCCATCTC TGTCCCCTTG GCTGTGTACT CTGGTGCTCA AGACATACAG
  CTCAGGCTAT GGCTATTTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60330236	NES15828260	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51724326					SNP	A	A	A	A	T	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60330236	NES15828260	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156055538 () rs orientation: forward

Symbol	Name	Function Class
Gm38113	predicted gene, 38113	675 bp upstream
Rr421145	regulatory region 421145	732 bp distal
Rr421146	regulatory region 421146	1365 bp proximal
Rr421147	regulatory region 421147	1503 bp proximal
Rr421148	regulatory region 421148	1651 bp proximal
Rr421149	regulatory region 421149	1771 bp proximal