rs51725654 SNP Detail

Summary

• ID
  rs51725654
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15075677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGCTGGG TGTGGGTGGG
  CATGCTTCAC CCTACATACT TCTATGTTAT CTTCTTCACT ATAAGGAATA CCCGATAAAC
  AAGGGAAGAG TGTTGTTTGG GTCTGCTGCT TAAAAGGGTC ATGGTCCATT ATATGTGGTA
  GGTGTGACAG CATGGTCGAT TACATGTGGT AGGTGTGACA GCACGGGCTT CGTCTATGGG
  A
  GTGACAGTCT GCCCAGGGTT TGTCATGTCC TGGCAGATGA GAAAGCAGAA AACTAGGTGG
  GCGAGGGGTG GGCTATAACC CTTGAGCCAT AGCCCCAGCT CCTAAACAGA TGCATACACA
  CACACACACA CACACACACA CTCGGATAGC AAGGAATGTG GCCCAAATCA AATTCATAAC
  TTAAACCATG AGGGTTTATA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148695668	ENSMUSSNP5551419	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs51725654					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15075677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	1571 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	633 bp proximal
Rr660169	regulatory region 660169	1727 bp proximal
Tssr76486	transcription start site region 76486	1490 bp upstream
Tssr76487	transcription start site region 76487	1509 bp upstream
Tssr76488	transcription start site region 76488	1622 bp upstream
Tssr76489	transcription start site region 76489	1705 bp upstream
Tssr80488	transcription start site region 80488	1943 bp downstream