rs51726769 SNP Detail

Summary

• ID
  rs51726769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118531885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG GCCAGTGAGC AGCCACAGCA
  R
  CCATGCTGAG TGAACCATGG GGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss61229492	NES16855740	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G		A	G		G
ss323216698	CHEV_9_118611935	CHEVERUD	SCREENING_POP	f	SNP							A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs51726769					SNP	G	G	G	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61229492	NES16855740	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118531885 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688309	regulatory region 688309	1340 bp distal
Tssr87646	transcription start site region 87646	531 bp upstream
Tssr87647	transcription start site region 87647	558 bp upstream
Tssr87648	transcription start site region 87648	574 bp upstream
Tssr87649	transcription start site region 87649	618 bp upstream
Tssr87650	transcription start site region 87650	660 bp upstream
Tssr87651	transcription start site region 87651	678 bp upstream
Tssr87652	transcription start site region 87652	955 bp upstream
Tssr91958	transcription start site region 91958	948 bp upstream