rs51726864 SNP Detail

Summary

• ID
  rs51726864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108144838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA GCCGCAAGAA GGAAGAGTTG
  R
  AAATCGGAAT GGCAAACTCC GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138673157	ENSMUSSNP6730162	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324152847	CHEV_12_109416789	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51726864					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108144838 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	1000 bp upstream
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	750 bp upstream
Rr472439	regulatory region 472439	within coordinates
Rr472440	regulatory region 472440	627 bp proximal
Rr472441	regulatory region 472441	1170 bp proximal
Rr472442	regulatory region 472442	1324 bp proximal
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	82 bp downstream
Tssr114949	transcription start site region 114949	272 bp upstream
Tssr114950	transcription start site region 114950	554 bp upstream
Tssr114951	transcription start site region 114951	557 bp upstream
Tssr114952	transcription start site region 114952	964 bp upstream
Tssr114953	transcription start site region 114953	1214 bp upstream
Tssr114954	transcription start site region 114954	1329 bp upstream
Tssr117676	transcription start site region 117676	631 bp downstream
Tssr117677	transcription start site region 117677	658 bp downstream