rs51727871 SNP Detail

Summary

• ID
  rs51727871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78479703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACAACA ACAACCAACC
  AACCAAAAAC CAAGTGCAAA AACAAAGCCA AACAAAGCCA GAGCAGGAAG CAGTGAGAGG
  AAGGACCAAG GGCTGAAAAC AGGAAAGCGG ACAATGGGTC CGGGAGCTTC ACTGAGGTAA
  AAGGAAGGAC CAGAGATAAA GCCTGAGAAG TATGGAAGGC GCTGTGTGCC AGGGCCGAGA
  Y
  GGAGCAGGGC TGTCAAGAGC GCCAGCATCC GACCCGGGAG AGGCAGCCCT GTGAGCAGCA
  CCTAGTCTTG AGTTTCCTGT CAGACTTTTC GCGTCACTCT CAGTACTGCC AGAAAAGAGA
  GGCCTTTAGA TTATAAACGG AATGTCTCTC ACTTGGTTAA GAACCTGTAA CCTGGGCTGG
  AGAGATGGCT CAGGGATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61426991	NES16809893	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51727871					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426991	NES16809893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78479703 () rs orientation: forward

Symbol	Name	Function Class
Slc17a5	solute carrier family 17 (anion/sugar transporter), member 5	within coordinates