rs51727885 SNP Detail

Summary

• ID
  rs51727885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGGGTT GCATTGGAGC
  AGGTGGTGTA CAGAGTCAGG AACTGTTGTT TTCTTACAAG ATATTTTTGG GTGGTCTGGT
  TCCTTCTGTT TCTAGCAGAC AGGGTAAAGC AGCCTACACT TGCATTTAGA TTTATTCACA
  ACCTGTATGT AACAGAAGCA CAGCAGTGAC TGGAGACCCA CTCCTGAGTC AAGATGCCAA
  W
  GCTATGGGAG TGACCTCATC TGCAAAAGCC ACCGACACTG CCCAAACCAC CTTGCAACAC
  ATCATCCATC TCGTGCATGC ATGCGTGTGC CTGTGCGTGA GTGTGTGCGT GTGTGTGTGT
  GCATACTTTA AGCAAGTCAT CACAGTATGG TTCATGGAAG GCCTCAGGGA CATAACCATT
  AGACTTGGTG CAGCATGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135862656	ENSMUSSNP694213	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320953863	CHEV_3_127112248	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs51727885					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202979 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	415 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	374 bp distal
Rr584774	regulatory region 584774	within coordinates
Tssr35571	transcription start site region 35571	443 bp upstream
Tssr35572	transcription start site region 35572	349 bp upstream
Tssr35573	transcription start site region 35573	322 bp upstream
Tssr35574	transcription start site region 35574	287 bp upstream
Tssr35575	transcription start site region 35575	266 bp upstream