rs51728719 SNP Detail

Summary

• ID
  rs51728719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75563932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTAGTC CGTCGGCTCC
  GAATTAGCCG GAGGAACTAC GATTTCCACC ACAGCAATGA CTCCATCTAC CATGAGGCCG
  CGGGGCGGAT TTTACTCAGG CCAGTGAGGG AAGACTCGGC CTCCCCACGC ACGAAGGCCC
  AACAAACCAG GCTTTGTTGT GGGAGCAGCG TCTGGGAAAG GCCAGAGTTT GTCATTCATC
  R
  AACCCAAAAC GCTGCGAGCT TACTCGCGGT TAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  GTCCCTGTAG CCCCGCCTCA CCGCGTTGTA TTGTGGGAAC TGCAGTTCTG GACTGTCCAG
  AGCTTGGAAG GCATAAAGAG GATAAAACCA ATTAAGATTC CGAGGTGGGT TGCGTTGCCA
  GGCAGGCGGG GAATTCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60495639	NES16525082	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51728719					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60495639	NES16525082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75563932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	35 bp distal
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr319131	regulatory region 319131	1732 bp distal
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	within coordinates
Rr404917	regulatory region 404917	868 bp upstream
Tssr141799	transcription start site region 141799	247 bp upstream
Tssr141800	transcription start site region 141800	29 bp downstream