rs51729060 SNP Detail

Summary

• ID
  rs51729060
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79312253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAAGTTT ATTAGAGATG
  ATGTAGATAA ATGAAAGGTG CAAACAGCCA TAATTTGAAA TATTAAAATT AATAATTTAA
  TTATTAATTA AATTAGTTTG AAATATTAAA ATGTGATAAG AGGATCAGAT TATGGAATCC
  TTCATTTTGA ACTTAGATAA CTTAGAGAAG TTATTTGCCC AATTTGCTCA GCTAACAGTT
  K
  ACTAATTTTC TGCCTCTCAA CAGATTGTAC TATGCTTGCC TTGGGGCCTG CTCACAATTA
  CATACGTCAT GCTCACCCAG TTCTTATGAC TCATTTTAAC AAGTGTGAAA ACTGTTAAAT
  AAATTCTTGA ATTTTTCTTT TTACTGTTTA AGGATTTTTT TTATTATAGC AAGAATTCTA
  TAATACAAAT TATGTTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144772723	ENSMUSSNP1568599	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51729060					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79312253 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	1050 bp proximal
Tssr129	transcription start site region 129	493 bp upstream