rs51732364 SNP Detail

Summary

• ID
  rs51732364
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4524025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGCATA AGGATTGCAG
  ATCCTGAGCA GAACTTGAGA TGGTGCTTAT GCTCCTGATA CCCAAGGGAT GCCAGGCCAG
  AGATGAGGAA CCTCGGGTCC CAGGCTTATC CGGAATCCTT GCTTTGTAAA CTGGTACCTG
  AAGCTCTTCA AAGCCCAGCC CATCCAACTC CAAAGGCTGG CAACGAGTCC TCAGAACGCG
  M
  CCCTTCTCTC CACGTCGCTC TTCTGCCTCT CGTTCCATCT CCTGCTTCGC AATCTGCAGC
  ATCAGAGTCT GCGGAATGGT TGGAGCAGAC AACAGAGTCC CAAAAAGTAT AAGAATAACA
  AATTTCCCTC CATCCTCCAG AGAGACAGAA TATCCGAACA TCCAAGTTTG TGTCTTTTAT
  TCAAAACCTG CCTCGTTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60964944	NES16164649	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51732364					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964944	NES16164649	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4524025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	501 bp proximal
Dnaaf3	dynein, axonemal assembly factor 3	1907 bp downstream
Rr641975	regulatory region 641975	403 bp proximal
Rr641976	regulatory region 641976	1492 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	1615 bp downstream
Tssr64335	transcription start site region 64335	544 bp downstream
Tssr64336	transcription start site region 64336	644 bp upstream
Tssr64337	transcription start site region 64337	787 bp upstream
Tssr70484	transcription start site region 70484	850 bp downstream
Tssr70485	transcription start site region 70485	1401 bp downstream
Tssr70486	transcription start site region 70486	1773 bp downstream
Tssr70487	transcription start site region 70487	1790 bp downstream