rs51733542 SNP Detail

Summary

• ID
  rs51733542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAAGACC CTTGAGAGTT
  GAAGAAAAAG CAGCAGAGAG GCCAGCACAT TTCTGGCTCA GGTGTTCAGG AAGAACATGG
  CTAAACTACC CAGAAAGCCC AACCTGAAAA CCTACAGAAA CAAGATTACT CTTCTGTCAG
  CTCCAGCTCC AAGGATTTAG AGCCATGATG AACAGATAGC CAATAGTGCC CATGGCCCTT
  R
  GACTAGGGCC ATTTTCCTCA TGGGGTGGAT TCAGACATGA CAGGTAAGGA GGGGGATAGC
  AGATGTAACT CTTCAACCCG GTAGAAAAGA ACCAAGGCTG CAAACATGAC ATACAGCAAT
  ACTTCTGGAG CCGCAGCGCC TGAGAAACTC TTATAAACTG TCTTGGAGAA CTGGTTTATG
  CTTTGAAGAC AATTCAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251706	ENSMUSSNP4684830	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51733542					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319278 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	754 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1081 bp upstream
Tssr37060	transcription start site region 37060	1095 bp upstream
Tssr37061	transcription start site region 37061	1107 bp upstream
Tssr37062	transcription start site region 37062	1140 bp upstream
Tssr41531	transcription start site region 41531	992 bp downstream
Tssr41532	transcription start site region 41532	1098 bp downstream
Tssr41533	transcription start site region 41533	1184 bp downstream
Tssr41534	transcription start site region 41534	1302 bp downstream