rs51734074 SNP Detail

Summary

• ID
  rs51734074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149210517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTTTCAG TTTGTGTGGC GATTCCTGAA CCCCAACAAT
  ATATTTCCAC TGGCCCTTGA CGTTTCACTC CAGAAGCCCT TGTAGAAATA TAGTTTTAGC
  R
  GTCAAAATGA CCAGACCAAG TCTAAAGCTG CGAAAACAAG ATTAGCAGTT CTCGGAGAAA
  TAACTATAAC AAATAATAAC AGTTCTCCTG TCCCGCCTCG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss60961297	NES16169783	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs51734074					SNP	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961297	NES16169783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149210517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	282 bp proximal
Gm56997	predicted gene, 56997	within coordinates
Resf1	retroelement silencing factor 1	395 bp upstream
Rr380294	regulatory region 380294	within coordinates
Rr641718	regulatory region 641718	776 bp distal
Rr641719	regulatory region 641719	within coordinates
Rr641720	regulatory region 641720	302 bp proximal
Rr641721	regulatory region 641721	351 bp proximal
Rr641722	regulatory region 641722	466 bp proximal
Rr641723	regulatory region 641723	646 bp proximal
Rr641724	regulatory region 641724	1604 bp proximal
Tssr59650	transcription start site region 59650	294 bp upstream
Tssr59651	transcription start site region 59651	372 bp upstream
Tssr59652	transcription start site region 59652	425 bp upstream
Tssr59653	transcription start site region 59653	526 bp upstream
Tssr59654	transcription start site region 59654	714 bp upstream
Tssr59655	transcription start site region 59655	763 bp upstream
Tssr59656	transcription start site region 59656	1309 bp upstream
Tssr64178	transcription start site region 64178	1222 bp upstream
Tssr64179	transcription start site region 64179	614 bp downstream
Tssr64180	transcription start site region 64180	637 bp downstream