rs51735204 SNP Detail

Summary

• ID
  rs51735204
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137191215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTCTTGGG TGCTATTTCC
  TCCTCCATCC CACACACTTC CGCTCTCGGT GGTCCCTGAA AGAGATGCAG GGCTGTTAGC
  CTCCCCGAAT CACCAAACTC CTTTCTTTCC TGAGTCCCTC CTTCGTTCAA TACCTCTCTG
  AGCATTTGCT CCCCGCTCCA GAAATTGTTA GCCTCTTGTG AGCCAGGAGT CAACCATGGC
  M
  TTGTCCACCA CAGAAGCCTA GCTACAACAA AGTCTTAATT TGAGAGTCAC AAAAAAATTG
  ACATTCATAT GTTTCTGAAC ATGAAACGAC CAAAAATGTA TTGAAAATCC AAAGCATAAT
  AAGCTTGCAG TGTTTGTGGC AGCTTGCTCC TGTGTTGTGT CTCAAGCCTT CCCTGCAGCC
  TTGGATTTGA ACGCAGAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss60847292	NES16004156	PERLEGEN	MM_PANEL2	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs51735204					SNP	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847292	NES16004156	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137191215 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	1575 bp upstream
Tssr49319	transcription start site region 49319	1411 bp downstream
Tssr49320	transcription start site region 49320	1399 bp downstream
Tssr53954	transcription start site region 53954	1481 bp upstream
Tssr53955	transcription start site region 53955	1465 bp upstream
Tssr53956	transcription start site region 53956	1446 bp upstream
Tssr53957	transcription start site region 53957	1429 bp upstream
Tssr53958	transcription start site region 53958	1374 bp upstream
Tssr53959	transcription start site region 53959	1361 bp upstream
Tssr53960	transcription start site region 53960	1295 bp upstream
Tssr53961	transcription start site region 53961	1196 bp upstream
Tssr53962	transcription start site region 53962	1178 bp upstream
Tssr53963	transcription start site region 53963	1139 bp upstream
Tssr53964	transcription start site region 53964	1099 bp upstream
Tssr53965	transcription start site region 53965	1074 bp upstream
Tssr53966	transcription start site region 53966	205 bp upstream
Tssr53967	transcription start site region 53967	172 bp upstream