rs51738234 SNP Detail

Summary

• ID
  rs51738234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62022488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAGCTT AAGGATATCC
  TCAGCTACAC AGTGAGCTGG AGGCCAGCCT GGGCTACGTG AGACCCCGTC TCAACAACCA
  AAGGGGGATT AGTTAGGGAG CACGGGAGCA GCAGTCCCAG CCATGCCTGG TTTCGCACAC
  CTGGGAGAGT CTGTCTATAC ACAGACGCAA CTCAAGCAGA GGTTCTTCAT ACACAGTCCC
  R
  TGCCTCAACA TGTTGGTTAA CTGTGCCTCT GTTTCCATAC AAAACTGAGG TTACAGGGAT
  GACCACAAAC AGCTGTGAGC ACCAAGAGTT TCTGTCTATG CTGAATGTTT AGGTCTGGCC
  TCTGGTGTGT TCATGGTCAT GGTGTTCTTT TTAAAGCCCC GCCTCCACCC TTCCTCATAT
  GGAACACAAG CTTCCCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61279719	NES16893275	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51738234					SNP	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279719	NES16893275	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62022488 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	within coordinates
Rr219987	regulatory region 219987	913 bp proximal
Rr228220	regulatory region 228220	within coordinates
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	777 bp downstream