rs51738992 SNP Detail

Summary

• ID
  rs51738992
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44217169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTTTGAG CGACGACCAG
  CGACAGCCAA TCGCCGCTCT CGAGTCGACC GACAGCCAAT GGCCGCTGCG TCTGTCAGAG
  CCCGTGCGCA CCAAAACACG GAAGAGGCGG GAATCGTCCC GGAGAGGGCT CCGAGTCCCA
  AGGGGGAGAG TGAGGGACGA CCGGATGTGG CTGAAGTTCG CGTCACCTTC AAAAGTGGGT
  K
  GGGCCTGCTC CCGACTGTGC GCAGGCGGGA AGCTTTGAGG CTTGAATTCC CACTACTGCG
  CAAACTCGCG CCGACCACCC ACTGGGCATG CGCCTAGTTT GGCCGGCCTT GTCTGTCATC
  TTCCTCACGG TGTTTGTAGT TCGGTTAGTT GTCTAGGTAG TTCGCCTACA CTGGGGCACC
  ACCTTCATCT TTGATTTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136393661	ENSMUSSNP3107948	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51738992					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44217169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	within coordinates
Hinfp	histone H4 transcription factor	201 bp upstream
Rr195005	regulatory region 195005	1832 bp proximal
Rr206299	regulatory region 206299	within coordinates
Rr368726	regulatory region 368726	within coordinates
Tssr89139	transcription start site region 89139	184 bp upstream