rs51739535 SNP Detail

Summary

• ID
  rs51739535
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:66902242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC CGGTCCCTTC CTCCGGCCGC
  A
  TCGCCCCGGC TTGACCGTAG CGCGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319758736	CHEV_1_66909657	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51739535					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66902242 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	Intron
Cpgi339	CpG island 339	within coordinates
Rr412477	regulatory region 412477	954 bp distal
Rr412478	regulatory region 412478	within coordinates
Rr412479	regulatory region 412479	184 bp proximal
Tssr12011	transcription start site region 12011	171 bp downstream
Tssr12012	transcription start site region 12012	182 bp downstream
Tssr12013	transcription start site region 12013	212 bp downstream
Tssr12014	transcription start site region 12014	217 bp downstream
Tssr12015	transcription start site region 12015	234 bp downstream
Tssr12016	transcription start site region 12016	258 bp downstream