rs51739560 SNP Detail

Summary

• ID
  rs51739560
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111829775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT ATTACCAGTC CTATTTTATA
  C
  CCTTCATTAA ACTGAATATT GCAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147213526	ENSMUSSNP2473612	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321263734	CHEV_4_111645183	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51739560					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111829775 () rs orientation: forward

Symbol	Name	Function Class
Skint7	selection and upkeep of intraepithelial T cells 7	345 bp upstream
Tssr38394	transcription start site region 38394	255 bp upstream
Tssr38395	transcription start site region 38395	344 bp upstream
Tssr38396	transcription start site region 38396	454 bp upstream