rs51739563 SNP Detail

Summary

• ID
  rs51739563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101008563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATC CATGGCTGCG TGCTGTGTAC
  Y
  TCTGTCCCAC TTCTGACGCT GCTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148929872	ENSMUSSNP2149843	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321627748	CHEV_5_101289716	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51739563					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101008563 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	1319 bp upstream
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr378349	regulatory region 378349	1735 bp upstream
Rr615578	regulatory region 615578	within coordinates
Rr615579	regulatory region 615579	951 bp proximal
Rr615580	regulatory region 615580	1330 bp proximal
Tssr47495	transcription start site region 47495	1320 bp upstream