rs51739870 SNP Detail

Summary

• ID
  rs51739870
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134295386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTTACT CGGTCCCTTA
  GAATACATGG GCAACAGAGT AATACTGAAA ACCAAGGCAC TTCCTTGTAA AATGAAGGTT
  TTACTGCTTT GAAGGGGAGG GGGGCACCAA ATGCAGTCTC CTCCCCATGG CTAACAGACT
  TCCTACAGAC CCACCCACTG CCTCTGACGT CACTGCCTCT GATGTCACTG CCCTCCGCTG
  M
  AGACACTTAC CAAAGTTGAA CTCCCTCACT TTGCGCTTGC CAGCGTTGGC GGGCTCCGGG
  ACGGGCGGGG GCGGGGGCGG CTCCGTGCTC TTTAGCCTCT TGGTGGGTGG AGAATAGTCA
  TCATCTTGAA AAAGAAAACC TTTGTTACCG GGGGAACCAG CTGCTGGGTG TCAGCGTGGT
  TTGAGGGCAA CTCTAGCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846268	NES16011309	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51739870					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846268	NES16011309	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134295386 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43481	predicted gene 43481			533 bp downstream
Gtf2i	general transcription factor II I			Intron
				Noncoding-Transcript-Variant
Tssr53620	transcription start site region 53620			454 bp upstream
Tssr53621	transcription start site region 53621			52 bp downstream