rs51740986 SNP Detail

Summary

• ID
  rs51740986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTTGAG AAGGAGATGA
  AGGAGGGTCC TCCTCTCTCT TCTACAGCAA GAAGTGTAGC AGCCGTCTCT GCATGGAAAG
  AGTGGGAGCC CAGGGAAAGC CACCTTCAAA AGGAGTTTGG AAAACATTAT TCTTCCTGAC
  TGGAGTCCTG AAGGAACCTC ATTAGGCCTG CTGACCAAAC GAGTACCTCC CTGGTCAGTC
  R
  CCTGCCGCTT AAGTCATTTG CTTAAAACAG GAATGTGTGG CTGAGCAGAG AGGAAAGGCA
  CTGAGTTTGG AGGGGAATGG AGAGGGAGTT GGTGCAGGCA GGGCCTGAGT GGCCAGCATA
  CTCACAAGCC CTTAGATTGT ATTAGTGCCT GCTTCCCTGG CACCTGGACC TAGCCTGGCA
  TGGGGCAGAG AGGGAGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60803577	NES16473399	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51740986					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803577	NES16473399	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718057 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1760 bp upstream
Rr419278	regulatory region 419278	1169 bp distal
Rr419279	regulatory region 419279	1351 bp distal
Rr419280	regulatory region 419280	18 bp distal
Rr419281	regulatory region 419281	293 bp distal
Rr419282	regulatory region 419282	1918 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron