rs51742434 SNP Detail

Summary

• ID
  rs51742434
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16186386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCG GTAATAACGT TTTGGAAAGA
  M
  TCTAAGTAAA GACAGGAATG AATTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148386710	ENSMUSSNP4907375	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss322110701	CHEV_7_17037810	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51742434					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16186386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	313 bp proximal
Rr400123	regulatory region 400123	156 bp upstream
Rr642666	regulatory region 642666	41 bp distal
Rr642667	regulatory region 642667	70 bp proximal
Tmem160	transmembrane protein 160	481 bp upstream
Tssr64613	transcription start site region 64613	466 bp upstream
Tssr64614	transcription start site region 64614	563 bp upstream