rs51742472 SNP Detail

Summary

• ID
  rs51742472
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCTCTCT CTCTGTGAGA TGATGGTCTT CCTTTGTAGC
  TCAGGCATCA GAGGCTCTTG GCTCAGCCTC CAAGTAGCTG GAAGTTGAGG TGTGGACCAC
  C
  GTGCCTGACT TTAGCCTGAT CCCTTTGGGG GTTGGAGATT GAACTCAGGG TCTCCCACAT
  TTTCTGTATG TTCTCTACAG TGAACTGAAG TCCTTTAGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss132349984	ENSMUSSNP2620018	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs51742472					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047208 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	690 bp upstream
Cpgi3111	CpG island 3111	557 bp proximal
Rr449891	regulatory region 449891	360 bp proximal
Rr449892	regulatory region 449892	618 bp proximal
Rr449893	regulatory region 449893	1727 bp proximal
Tssr102419	transcription start site region 102419	506 bp upstream
Tssr102420	transcription start site region 102420	531 bp upstream
Tssr102421	transcription start site region 102421	650 bp upstream
Tssr102422	transcription start site region 102422	671 bp upstream
Tssr102423	transcription start site region 102423	681 bp upstream
Tssr102424	transcription start site region 102424	702 bp upstream