rs51743638 SNP Detail

Summary

• ID
  rs51743638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCCTTG TTCCAGACCC
  CGGAGACCCG CTGTCTACAC TAACGTCTTT GACTACCTGG AGTGGATTGA AAGCACCATG
  GAAAAAAACT GAGTTCATGC TAAGATGGAC AGACTGGAGA GGAAGACGGA TGTAGAATGA
  GAGGATGCTG CAGGATTCCA GAGCCCCAGC TTCTCTGATG CGTGTCAAAG CACCCCCGCA
  Y
  GCCCCATGAT GAAACTCCGC CCTCTCAGAC TTCGGACCCT CAGACTTCAC TCCTTAGTCT
  CCCCCGAAGA CTCCTCCCAC TTAGGTCATC TTCCCTCTTG GGGTCTGCTC CCAGGCAAAA
  CAATTATAAT AAAACCACGC CCCTTCAAAA AAAAAAAAAA AACCAACTGA GACACACCTC
  CTTTGCTCCT GGCCCATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149084083	ENSMUSSNP879295	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51743638					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	353 bp proximal
Cpgi18946	CpG island 18946	1082 bp proximal
Klk8	kallikrein related-peptidase 8	1325 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	154 bp proximal
Rr646022	regulatory region 646022	1222 bp proximal
Rr646023	regulatory region 646023	1336 bp proximal
Rr646024	regulatory region 646024	1442 bp proximal
Tssr66051	transcription start site region 66051	1292 bp upstream
Tssr66052	transcription start site region 66052	1315 bp upstream
Tssr66053	transcription start site region 66053	1771 bp upstream
Tssr72173	transcription start site region 72173	1255 bp downstream