rs51743672 SNP Detail

Summary

• ID
  rs51743672
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26050260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AATGTCTAGA ACTGGAGGGG GCTGTGGGGG TCACCATACC AGCAGCAGCC
  S
  ATGAGCTTCC GGGGGTCCTC ACCTTTCTTT TCTCGTCCAC CTGAGAGAAG           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255649	NES15703159	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51743672					SNP	G	G	G	G	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255649	NES15703159	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26050260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8784	CpG island 8784	1745 bp distal
Cpgi8785	CpG island 8785	801 bp proximal
Gm56915	predicted gene, 56915	1397 bp upstream
Jmjd8	jumonji domain containing 8	within coordinates
Mir3082	microRNA 3082	79 bp downstream
Rr405106	regulatory region 405106	1532 bp upstream
Rr523679	regulatory region 523679	1645 bp proximal
Stub1	STIP1 homology and U-Box containing protein 1	within coordinates
Tssr143193	transcription start site region 143193	1821 bp upstream
Tssr146863	transcription start site region 146863	1582 bp downstream
Tssr146864	transcription start site region 146864	1604 bp downstream