rs51744022 SNP Detail

Summary

• ID
  rs51744022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151336098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttctctgt gtaaccctgg ctgtcctgga
  actcactctg tagaccaggg tggcctcgaa ctcagaaatt cgcctgcctc tgcctcccaa
  gtgctgggat caaaggcgtg ggccaccact gcacagctGC CAATTTTCAA GTTTAGCTAT
  R
  TGTTTCCAAA CTTGGCCTTA AAACTACAAG ATGATTTAAA AATGTGCATC TCACTAGTTT
  TAGAGCATGT TTTGAGAATC TGAGTATCTA TCATTAGGAA ATAAGGTTTC CAggctggag
  agatggttca gctaactgct gactgctctt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
ss60818539	NES16500318	PERLEGEN	MM_PANEL2	f	SNP	A	A	G		A
ss320056667	CHEV_1_153307477	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
rs51744022					SNP	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60818539	NES16500318	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151336098 () rs orientation: forward

Symbol	Name	Function Class
Rr372239	regulatory region 372239	within coordinates
Rr420294	regulatory region 420294	1099 bp proximal