rs51745715 SNP Detail

Summary

• ID
  rs51745715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112500886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTAAGT CACACCTACC
  ACCATTATGG TGTCAAAATA TTTAACTGAG AAAATTTCCA TGAAGTTATT TGTTTTGTTA
  TTTGTTTAAG TACTAATAAA TATGTGATTG CTACGTGTTA GAACAAAAAC CACATTTTAA
  TTAAAACAAT ATTGCAGTTG TAATCCTGGG ATTCTGGAAT CCAAAGCAGG AGAATCGTTT
  R
  GGGCCAGTTT GAGCTATCTG TGTAAGGAGA CACCAGCAGT AAATGAATGA ATAAACAAAT
  AACTTTTCAT TTCATTTAGT TTGCTATTTT CCAAAACAAA GAAAATTAGT AAGAGCAGCC
  CAGTTTTACG TTCTTGGCAT ATTAATTACA TTCTTGACAA TTAAACCAAC CTTGCTTGAA
  GCTTGCACTG TGGTACACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696538	NES15531840	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51745715					SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696538	NES15531840	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112500886 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
D13Mit260	DNA segment, Chr 13, Massachusetts Institute of Technology 260	1244 bp proximal
Gm48837	predicted gene, 48837	within coordinates
Rr282338	regulatory region 282338	686 bp distal
Rr282339	regulatory region 282339	1116 bp proximal
Tssr121108	transcription start site region 121108	916 bp downstream
Tssr121109	transcription start site region 121109	884 bp downstream
Tssr121110	transcription start site region 121110	1792 bp upstream