rs51746090 SNP Detail

Summary

• ID
  rs51746090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135778041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCAAACC ACACGGTCCT AAGCCCCAGA CCTATGCTTG
  GCATAGCAGG TAGTCTCTGC TGAGCAGTGA ATCACCTTCT TACTGTCTTC CTGTCTCCCA
  Y
  CCTGCTCCTC TCCATATCTC TGTGGCGGTC TTGGTCTTTC TCTCTGGGTC TTTCTCTCAT
  GGTTTCCTGG TTTAGCAAGC TCAGGTGGGT ACAAACCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145548359	ENSMUSSNP5660514	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51746090					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135778041 () rs orientation: forward

Symbol	Name	Function Class
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	858 bp upstream
Tssr9020	transcription start site region 9020	1455 bp downstream
Tssr9021	transcription start site region 9021	1435 bp downstream
Tssr9022	transcription start site region 9022	947 bp downstream
Tssr9023	transcription start site region 9023	873 bp downstream
Tssr9024	transcription start site region 9024	837 bp downstream
Tssr9025	transcription start site region 9025	547 bp downstream
Tssr9026	transcription start site region 9026	349 bp downstream
Tssr9027	transcription start site region 9027	231 bp downstream
Tssr9028	transcription start site region 9028	193 bp downstream
Tssr9029	transcription start site region 9029	374 bp upstream
Tssr9030	transcription start site region 9030	409 bp upstream
Tssr9031	transcription start site region 9031	468 bp upstream
Tssr9032	transcription start site region 9032	1051 bp upstream
Tssr9033	transcription start site region 9033	1896 bp upstream
Tssr13894	transcription start site region 13894	1450 bp upstream
Tssr13895	transcription start site region 13895	1406 bp upstream
Tssr13896	transcription start site region 13896	879 bp upstream
Tssr13897	transcription start site region 13897	851 bp upstream
Tssr13898	transcription start site region 13898	434 bp downstream
Tssr13899	transcription start site region 13899	502 bp downstream
Tssr13900	transcription start site region 13900	512 bp downstream
Tssr13901	transcription start site region 13901	1073 bp downstream
Tssr13902	transcription start site region 13902	1934 bp downstream