rs51747595 SNP Detail

Summary

• ID
  rs51747595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122824163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAAGAATG AAAAGAATCT CTGAGTTTCT GACCTTGTAG
  ATAAAAGCAT TTATTCATAG GGAATATGTA AACCGCTCAT ACTGGAAAGG CAGAACTGCA
  S
  TCTTATGCCC AGAATTACCT CGTAGTAAAC AAGATCTTTT AGTGATTTGA AATTTCCACA
  TAATTGTTCA TACAACAGTT GTAGCCTAAG GCCCTTCTCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	PWD/PhJ
ss60938167	NES16193089	PERLEGEN	MM_PANEL2	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	PWD/PhJ
rs51747595					SNP	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938167	NES16193089	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122824163 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Foxj2	forkhead box J2	1838 bp downstream
Tssr58709	transcription start site region 58709	765 bp upstream
Tssr58710	transcription start site region 58710	954 bp upstream
Tssr62965	transcription start site region 62965	669 bp upstream
Tssr62966	transcription start site region 62966	547 bp downstream
Tssr62967	transcription start site region 62967	585 bp downstream
Tssr62968	transcription start site region 62968	662 bp downstream
Tssr62969	transcription start site region 62969	966 bp downstream
Tssr62970	transcription start site region 62970	999 bp downstream
Tssr62971	transcription start site region 62971	1064 bp downstream
Tssr62972	transcription start site region 62972	1166 bp downstream
Tssr62973	transcription start site region 62973	1225 bp downstream
Tssr62974	transcription start site region 62974	1292 bp downstream
Tssr62975	transcription start site region 62975	1403 bp downstream
Tssr62976	transcription start site region 62976	1449 bp downstream
Tssr62977	transcription start site region 62977	1512 bp downstream
Tssr62978	transcription start site region 62978	1589 bp downstream
Tssr62979	transcription start site region 62979	1620 bp downstream
Tssr62980	transcription start site region 62980	1645 bp downstream
Tssr62981	transcription start site region 62981	1664 bp downstream
Tssr62982	transcription start site region 62982	1825 bp downstream