rs51748765 SNP Detail

Summary

• ID
  rs51748765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78524555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCACACT TGGAATATGG
  TAATAGAGCC CTGGGCTAGG CAACACAACA GAGGAGCACA AACAAGTTTG CAGTGATTTC
  CACAGTGCCC CTTTGCAAAT TAGCCGTGAC TTCCACAGGT GCCTGTTTGA TTCTAACACC
  TGTGAAGTCT GAAATTGTCC CCGAGTGTTC CAACAAGTGG ACAAAGAGCC AGATTCCTTC
  Y
  GTGTGTGGCT GCATCGAATC AGACTGCAGG GGAAGAACAT CCGGAGTTTC CTACGTGGGA
  GGTGTTTGTG GGCCTGGCCT GGAAACTCTG CTTGCCACCA TTGCTCATAT ACAGATGGCC
  AGGAGGGTGG GAAATGCAGG CCAGTGTCTA CCCAGAGAAT GGGCAGAGAT AGATGCCTGT
  CTCACAGAAC ACCATGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss61426854	NES16809515	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs51748765					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426854	NES16809515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78524555 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	Intron
Cpgi22073	CpG island 22073	1189 bp distal
Gm69315	predicted gene, 69315	1616 bp upstream
Rr683598	regulatory region 683598	1717 bp distal
Rr683599	regulatory region 683599	1126 bp distal
Tssr86295	transcription start site region 86295	1799 bp downstream
Tssr86296	transcription start site region 86296	1780 bp downstream
Tssr86297	transcription start site region 86297	1764 bp downstream
Tssr86298	transcription start site region 86298	1530 bp downstream
Tssr86299	transcription start site region 86299	1487 bp downstream
Tssr86300	transcription start site region 86300	1464 bp downstream
Tssr86301	transcription start site region 86301	1441 bp downstream
Tssr86302	transcription start site region 86302	1392 bp downstream
Tssr90659	transcription start site region 90659	1616 bp upstream