rs51748802 SNP Detail

Summary

• ID
  rs51748802
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTGATC ATTACAGGCT
  GGGAAGGGTG CGGTTAGGGC AACACCGTGC AGGAGTCAGT AGGAACGAAT TCATTGGAGA
  CAATACTCGC ATTTGAAGGA CCTAGAGGGG TTCGTGAACC TCAGCTCGCT CACCCACTAT
  CTCATTTTAC TTAAAATAAT CACTACTGAA TTGAAAGAAC TAGTTCATCA TAAGGCTCAA
  S
  TAACCGCGGC GCGTTGCCCA AACATTTCAT TTACATTCTG GATGGTCTTC TGAGGGTGTC
  CTTAAGAATG GTCTGTATTA GTCCTGAGCT GAGAAGTCCG AGATTAAGGG CCTTCCTTCT
  CTGGCCAGTA GATGGTAGCC TGCATCTTTC CGTGGGTTTT TCTTTTGTGC CTGTCTGCAC
  CTGTCAGGTT TTTTATTTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359529463	MGP_WTSI_3_123212107	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	G	G	C	C	G	G	C	C	G	G	G	G	G	G	G	G	C	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs51748802					SNP	G	G	G	C	G	G	C	C	G	G	C	C	G	G	G	G	G	G	G	G	C	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359529463	MGP_WTSI_3_123212107	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	231 bp distal
Gm9369	predicted pseudogene 9369	753 bp downstream
Rr584525	regulatory region 584525	315 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	121 bp proximal
Rr584528	regulatory region 584528	1707 bp proximal
Snhg8	small nucleolar RNA host gene 8	853 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	1123 bp upstream
Tssr31551	transcription start site region 31551	621 bp downstream
Tssr31552	transcription start site region 31552	574 bp downstream
Tssr35502	transcription start site region 35502	848 bp upstream
Tssr35503	transcription start site region 35503	260 bp upstream