rs51749435 SNP Detail

Summary

• ID
  rs51749435
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45865327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGCTGC GGACAAAGCT
  ACACAGGACA GTGGGCGTTT AAAAGTGAAG AAATCACAAC TGCAGACAAC TAGTTACTAG
  GTTGCTGAAA CCAAATCTAG GGGTAACGTT TCCCTGAGGG GTAGGTGCCA CTTCCGGGAT
  GATCCTGGAA ATGGTACTCA AAAGGGGAGA TCAGACTTCA AGGAAATGGA TCCTGATGGT
  W
  GATCATGGCC TGCCAGAAAC CAAACTCCTC TCCCTCCCAA AGAAAGCCTC AGGTGCCTCC
  TCCTCAACTC CAGTGCTTCC GAGTCAATCC AGATCGGGCC TTGGAGAATG AGCAAGAGAG
  CTAGGCAGGC CACACAGCCA GGCAGCAAGA ATCTCCCAGG CTGTGCTCTG CCTGGGCCCA
  GCTCTGCCAG CCTTCTTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136420927	ENSMUSSNP3951873	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51749435					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45865327 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	72 bp upstream
Cpgi21698	CpG island 21698	404 bp proximal
Rr678012	regulatory region 678012	within coordinates
Rr678013	regulatory region 678013	938 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr84819	transcription start site region 84819	1298 bp upstream
Tssr89292	transcription start site region 89292	1145 bp upstream
Tssr89293	transcription start site region 89293	345 bp upstream
Tssr89294	transcription start site region 89294	937 bp downstream
Tssr89295	transcription start site region 89295	1141 bp downstream
Tssr89296	transcription start site region 89296	1167 bp downstream
Tssr89297	transcription start site region 89297	1197 bp downstream
Tssr89298	transcription start site region 89298	1224 bp downstream
Tssr89299	transcription start site region 89299	1250 bp downstream