rs51749987 SNP Detail

Summary

• ID
  rs51749987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97939872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGGGAA TGGTGATGTG
  ACCCAATCCT GATCATTGCA ACCTGGAAGG AAGTACTTTT AGGGAGACCC TTTTGTTCTT
  ATAATACAAG GATAAAGAAT GGGTAGAAGC TGACTAGAAC ACAGAGGTAA CTGGGAGTCA
  CAACTGGACA AGCTTAAAAC CTCCCCTTGT GGTCTGACTC TGACTTTTAA AACCAATTTC
  Y
  ATCAGGTATT TTGCTGAAAC TGAAGTTATA CTAATAAGAA AATAATAATT TAAATTTCCA
  TTACCTTGTC ATGAGAGCTT CTTAGAAAAT ATCACGCTAT TTTGCATCAT TTGAATGCCT
  TTTAAAAATA CACTTGAAAA TGGAAGGACA GAGGAGAAAC AAACAAAAAT TTACAATGAA
  TCTATTTCCT TACATGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61683891	NES17636515	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	C	C		T
ss324132257	CHEV_12_99211823	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51749987					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61683891	NES17636515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97939872 () rs orientation: forward

Symbol	Name	Function Class
Rr258643	regulatory region 258643	529 bp proximal
Rr269010	regulatory region 269010	294 bp proximal