rs51749999 SNP Detail

Summary

• ID
  rs51749999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26752340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACATTAA ATGTGTACAG
  AGCCCTTTGA CTGAAGGTTC TGCCACTTGA GCCCAGAAAA CTGTCCTGAG GGGTCTTGCG
  TGGCAACACT CTCCTGGAGA TTCTGAGAAT TCCCCTTGCT GACTTCCCAC TAGCACACAT
  GCGCATTGGG TTCTCCAGCC ATGCCAGGGA CCGCTCCACT CAGTGTGCAA TGGATGCAAG
  Y
  TGCTCTCGAG CACTTCAGGG AATGGGAAAC AAAGCTGAGA AGCTTCAAGT GATCACAGGG
  AAAGGAGAGT GAGGCCCCTC GCCAGGAGTC AGCATCTGTA GGATTGAAGC GACTTCCAGA
  TACAGTGCAG GATTCGATGG CATGGGAGTT ACAGTCTATG GGGCTCAACT GATGCCGCAA
  CCCACCTAGC AGCCATAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554838	NES16569783	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	C	C		T	T	C	T
ss145405338	ENSMUSSNP3379381	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51749999					SNP	T	T	T	T	T	T	T	C	T	T	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554838	NES16569783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26752340 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Gm64855	predicted gene, 64855	1967 bp upstream
Tssr5048	transcription start site region 5048	1965 bp upstream
Tssr143239	transcription start site region 143239	1527 bp downstream
Tssr143240	transcription start site region 143240	480 bp downstream
Tssr143241	transcription start site region 143241	466 bp downstream
Tssr143242	transcription start site region 143242	436 bp downstream
Tssr143243	transcription start site region 143243	411 bp downstream
Tssr143244	transcription start site region 143244	394 bp downstream
Tssr143245	transcription start site region 143245	759 bp upstream
Tssr146959	transcription start site region 146959	1669 bp upstream
Tssr146960	transcription start site region 146960	749 bp upstream
Tssr146961	transcription start site region 146961	719 bp upstream
Tssr146962	transcription start site region 146962	690 bp upstream
Tssr146963	transcription start site region 146963	643 bp upstream