rs51751414 SNP Detail

Summary

• ID
  rs51751414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105286411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGTTAT ATTTTATTTA
  GGGAGAGGGG TGCACACCGG TGACAGTATA GGTATGGAGG ACAGGTTGCA CTTTCAAGAC
  TCCGTTCTCC CCTTCCCCAT GAGACTGCAC TCAGATCATC AATCTAGGAT CAGGCAATCT
  AGGACAGGCA TCTTATTCAC TGAGCCATGT TGTGGACTCT GGAAAAAAAT AATAATGAGA
  R
  ACTAGGCAAG GTATTAACAA CTCAGATGTT GGTCAGGGAC TTGAAATAAA GAAGGTGATT
  CATAACACCC CAACATTTTA CCAGCAGAGC TTAGCCCAGA AATATTATTA TGCATGAGTG
  CCTCTCAAGA TTGCTTTTAG GAAAGCAATT TCAGGATTCA GTAATTATTC TAAAATGTTT
  CAAACTGCCC CCCCCCAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145082641	ENSMUSSNP3809269	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51751414					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105286411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	1665 bp distal
D1Mit307	DNA segment, Chr 1, Massachusetts Institute of Technology 307	1165 bp proximal
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	1976 bp upstream
Rr416391	regulatory region 416391	1944 bp distal
Rr416392	regulatory region 416392	1354 bp distal
Rr416393	regulatory region 416393	338 bp proximal
Tssr8255	transcription start site region 8255	1918 bp downstream
Tssr8256	transcription start site region 8256	1900 bp downstream
Tssr8257	transcription start site region 8257	1829 bp downstream
Tssr8258	transcription start site region 8258	1597 bp downstream
Tssr13128	transcription start site region 13128	1972 bp upstream
Tssr13129	transcription start site region 13129	1898 bp upstream
Tssr13130	transcription start site region 13130	1723 bp upstream