rs51751784 SNP Detail

Summary

• ID
  rs51751784
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89339957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGC AACGATCGCT TAGGTGGGAC
  S
  GGCACTGCAC CCCGCAGGCC CCAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133372182	ENSMUSSNP4910804	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss321852058	CHEV_6_89312969	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51751784					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89339957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	within coordinates
Plxna1	plexin A1	362 bp upstream
Rr146639	regulatory region 146639	within coordinates
Rr152199	regulatory region 152199	1350 bp proximal
Tssr57621	transcription start site region 57621	1641 bp upstream
Tssr62008	transcription start site region 62008	401 bp upstream
Tssr62009	transcription start site region 62009	338 bp upstream
Tssr62010	transcription start site region 62010	604 bp downstream
Tssr62011	transcription start site region 62011	1409 bp downstream
Tssr62012	transcription start site region 62012	1520 bp downstream