rs51752109 SNP Detail

Summary

• ID
  rs51752109
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90363982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTACA ATTGTGTGCC
  CTCAAGTATA ACTTCAGTCA TTCTCACAGC CCATTGAAAG CTCTTGTACT AGGTCAGTGT
  TATACAGTTA AAGGACAAAG TCAGACCAGG TAGTGAGGTC AGGGTAGACT TTTTCCAGCA
  TTGGTGACCA GGAGAGCTCA TCTGAAACAT ACTATCTGCA GTAATTATTG GAACTCAATT
  W
  TGTGAGATAG GACTGACAGT GTGTGACCCA GGACTACACT GTACATCACA ATGTTAGCAT
  TGGCTCTCTG AAGTGGCTTA AAGTACCCAG GGAAACAAGA ACATTCTTTT TTTTTCTTTT
  TTTTTTTGTC TGTTATATAT ATATATATTT TAAAGATTTA TTTATTATTA TATGTAAGTA
  CACTGTCTTC AGATGCACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60907081	NES15949217	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51752109					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60907081	NES15949217	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90363982 () rs orientation: forward

Symbol	Name	Function Class
C030015A19Rik	RIKEN cDNA C030015A19 gene	within coordinates
Rr137432	regulatory region 137432	219 bp proximal
Rr379740	regulatory region 379740	1699 bp downstream
Rr379741	regulatory region 379741	1981 bp upstream
Zxdc	ZXD family zinc finger C	within coordinates