rs51752634 SNP Detail

Summary

• ID
  rs51752634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41490751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGTACATA TATAATATAT AATGTATATA TTACAATGTC
  TAGTTTCCCC TGACCTGATG GTGTATTTTT GATCTCATTA GTAGTCAGGG AGATGTCTCC
  R
  TGCATCCGGT GCTGCTAGTC CGGGAGGAGA CATGCTACAA CACAGAGAGA GCAAGCTCGA
  GAGAATTTTC GAAGAGGCTT GTCTTCAAGA TATGGAAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61386160	NES16764745	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G	G	G	G
ss136358654	ENSMUSSNP1798769	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51752634					SNP	G	G	A	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386160	NES16764745	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41490751 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	184 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	within coordinates
Rr677061	regulatory region 677061	53 bp proximal
Rr677062	regulatory region 677062	794 bp proximal
Rr677063	regulatory region 677063	1897 bp proximal
Tssr84512	transcription start site region 84512	205 bp upstream
Tssr84513	transcription start site region 84513	233 bp upstream
Tssr84514	transcription start site region 84514	395 bp upstream
Tssr84515	transcription start site region 84515	480 bp upstream
Tssr84516	transcription start site region 84516	515 bp upstream
Tssr84517	transcription start site region 84517	548 bp upstream
Tssr84518	transcription start site region 84518	1248 bp upstream
Tssr84519	transcription start site region 84519	1296 bp upstream
Tssr84520	transcription start site region 84520	1448 bp upstream
Tssr84521	transcription start site region 84521	1489 bp upstream
Tssr84522	transcription start site region 84522	1513 bp upstream
Tssr84523	transcription start site region 84523	1611 bp upstream
Tssr84524	transcription start site region 84524	1792 bp upstream
Tssr84525	transcription start site region 84525	1845 bp upstream
Tssr84526	transcription start site region 84526	1876 bp upstream
Tssr88995	transcription start site region 88995	57 bp downstream
Tssr88996	transcription start site region 88996	91 bp downstream
Tssr88997	transcription start site region 88997	1331 bp downstream