rs51753965 SNP Detail

Summary

• ID
  rs51753965
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122579818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGCAAC ATTCAAACTA
  AATGAAACCA CAGACACAGA CTGACAGACA TGGGCAATCC AGCATGCCCA GAACCAGAAG
  CAAATGTTCC CTCAGTGGAA ACCAGTGAAA AGCGGGCCGT CTCCTGTCCT CCTCTGACCC
  TCGGAGCAGT GCTGCGTCCA CTTTCTCCTT TCTTGGGTCC TAGAGAGGCT CCACCAGAAA
  S
  CAGAATACAG GCTCACCTCC GGGAGTCCAG ATGACTGAAA AACAGTCCGA GGTGCTGCTA
  ATTCAGCTTA AGGGCTCAAG TAGGTTAGCG TTTGGTATCC AAATGTTAGG GTGTAAAAAT
  CTAAAAATAA ATAAATAAAT AAGTCTGCCA AGTTATCCCA CAAATTAGGA TCTAGGGATA
  GAAGTCTTCC CTAGGAACTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60938746	NES16186276	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51753965					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938746	NES16186276	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122579818 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	415 bp upstream
Rr399899	regulatory region 399899	347 bp downstream
Rr399900	regulatory region 399900	1251 bp upstream
Tssr58686	transcription start site region 58686	154 bp downstream
Tssr62923	transcription start site region 62923	515 bp upstream
Tssr62924	transcription start site region 62924	459 bp upstream
Tssr62925	transcription start site region 62925	437 bp upstream
Tssr62926	transcription start site region 62926	224 bp downstream
Tssr62927	transcription start site region 62927	1517 bp downstream