rs51754445 SNP Detail

Summary

• ID
  rs51754445
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:18293635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACATAAC AGAAAGAAAA
  TCTGAATTAT ATATCAGTAA CTTCAAAAAA TATACTCAAT TTAGTAATGT TTAATTCCTT
  GCTCACAGTT GTTTAATCAA AACTATATAT TTTTGTTTCC CACAGCAATA CGACTCACTA
  GAAACAAGGC CACAAATCCT TTATTCATGA TACACTCTGG GGAACTCTAA GTTAACTATT
  M
  CCTTTGCTAC AAAATCACTT CCTTGTCCCA AGCTGACATG TGATAATATT TTCAGCTCAG
  TGAAACATTC ATCTTTCTAA TGCATCATCT GATTTTACCT GTCCTCCACA GGTCCAGAAA
  ACAAAACAAA AGAAAGAGAA CTGGGAGCTT CATGTTGATG AGTAGTTCAC AGCAGAGCTT
  TCAGGGTCTT TATATGAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60702809	NES16337144	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	A	C	A	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51754445					SNP	C	A	A	A	C	A	C	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60702809	NES16337144	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:18293635 () rs orientation: forward

Symbol	Name	Function Class
Defb44-ps	defensin beta 44, pseudogene	within coordinates
Gm71262	predicted gene, 71262	within coordinates
Tssr11066	transcription start site region 11066	159 bp downstream
Tssr11067	transcription start site region 11067	192 bp downstream