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rs51755581 SNP Detail
Summary
  • ID
    rs51755581
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:31343153 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAATGTACAG AAAACTCAGC
    TGTCAAGACA GAATGGCATT TAAAAATCAA AAGTAATACA TAGATATGTA GTGAATAAAA
    TGTCAAAAAT CTGTGCTTAG ATAAGAGTAC CCCACTTCTA CATTGTAATC TTGGCCCTGC
    TTCCAATAAA CCTTTATTTA TTAAAGCAAG TAGGAGCCAA GGAGGCAGGG GCTTTGCCTA
    M
    CATACAGGCT CAAATGTCTG TCTCTGGAGT TTACTCTGAT GGTCCTTTAA GATGTGGGTT
    CTAACGGTTC TCCCCACCCC CCCGTGCACC CTGGGTGTCA TGGTCAATGT GACAATCAGT
    CAGTGTGATA TGTTTTAAAT GTGACTTGCC AAAAAAAATC ACACTGAACC ATCATTTCTA
    GTGCAGTGGT TAAGGAACCA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60562271 NES16490748 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C A A A C A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51755581 SNP C C C C C C C C C A A A C A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60562271 NES16490748 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:31343153 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr330604 regulatory region 330604 1553 bp distal
Rr334775 regulatory region 334775 1048 bp proximal
Rr341219 regulatory region 341219 1753 bp distal
Tff3 trefoil factor 3, intestinal 1127 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory