rs51756496 SNP Detail

Summary

• ID
  rs51756496
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110664459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGCATA AGCCTTTTTA
  ATCCAAGCAC TCGGGAGGGA GTCAGAGGCA GGTGGATTTC TGAGTTTGAT GACAGCCTGG
  TCTACAGGGT GAGTTCCAGG ACAACCAGGG AAACCCTGTC TGGGGGAGTT GGGGGGAAGA
  AAGAAGAAAG AATGTGCTCT GTGGACAAAA ACACAGCAGG CAATTTCCTC TGGGAGAGGA
  M
  GAAAGTCACC CATCTCCATC TCGCCCTCCC TCCAGGGAAC GAGGCCCTTT CCCAGCAGCT
  GAGGAAAGAC CTCTGGCCCC CCTCTCTGAA CTGAGTGGGG GCATTAAGTA GAAACAGTTT
  TCTTTTTTGA GGTATTAGCT TTTTTTATAC AGGATCACAT TTTGCAACCC CTTGCTATGC
  AGAGCAGGCT GGCCCTGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138692761	ENSMUSSNP5791064	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51756496					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110664459 () rs orientation: forward

Symbol	Name	Function Class
4932703K07Rik	RIKEN cDNA 4932703K07 gene	909 bp downstream
Cpgi5120	CpG island 5120	884 bp distal
Gm60092	predicted gene, 60092	1040 bp upstream
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	1630 bp upstream
Rr403501	regulatory region 403501	1423 bp downstream
Rr472969	regulatory region 472969	1140 bp distal
Rr472970	regulatory region 472970	550 bp proximal
Rr472971	regulatory region 472971	1051 bp proximal
Rr472972	regulatory region 472972	1688 bp proximal
Tssr115232	transcription start site region 115232	1390 bp downstream
Tssr115233	transcription start site region 115233	1029 bp upstream
Tssr117789	transcription start site region 117789	1763 bp upstream
Tssr117790	transcription start site region 117790	1706 bp upstream
Tssr117791	transcription start site region 117791	1607 bp upstream
Tssr117792	transcription start site region 117792	1578 bp upstream