rs51757594 SNP Detail

Summary

• ID
  rs51757594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTCTTCT CCCTTGTCCT TCCCGAGATA CCACCTGACC
  CATTGTGAAA GTCACATCAT GAAACAGGAC CTGTCAGAGA AGGGAGACGC TGAAGAAAAC
  Y
  GGGATGGCAC CATTCAGTCC CTGGAGGCCT CAGGAGCACT GGCAGTGGAG CCAGGCAATA
  AGGAGGGGGT TTTCTAAGTT TAGTATGAGC AGAGGGATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132360156	ENSMUSSNP2875860	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323731054	CHEV_11_69497525	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51757594					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1730 bp distal
Rr450068	regulatory region 450068	1965 bp distal
Rr450069	regulatory region 450069	1449 bp distal
Rr450070	regulatory region 450070	1060 bp distal
Rr450071	regulatory region 450071	within coordinates
Rr450072	regulatory region 450072	1226 bp proximal
Rr450073	regulatory region 450073	1521 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1939 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	300 bp upstream
Tssr102520	transcription start site region 102520	332 bp upstream
Tssr102521	transcription start site region 102521	373 bp upstream
Tssr102522	transcription start site region 102522	466 bp upstream
Tssr102523	transcription start site region 102523	528 bp upstream
Tssr102524	transcription start site region 102524	1914 bp upstream
Tssr108780	transcription start site region 108780	1944 bp upstream
Tssr108781	transcription start site region 108781	1252 bp downstream
Tssr108782	transcription start site region 108782	1314 bp downstream
Tssr108783	transcription start site region 108783	1497 bp downstream
Tssr108784	transcription start site region 108784	1514 bp downstream