rs51759078 SNP Detail

Summary

• ID
  rs51759078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGTCCT GAAGGACTGG
  AGTGTGTTCC AGACTTATTG GCTTTTGCGC TAGCCAGTCT CTCCCGGGAG GAGGACAGGC
  CGAAATGCCC ACGGCGCAGT CGGCTACCAG AAGCTGCGAG TGGGGGTAGG TGGGCGGCAA
  GAAGGGAGGG CCTTTTTTTT TAATGTAGTG TGTTGTGTTT GAAGGAGAGA ATTTATTTCC
  S
  CTTCCTATGA TTGCAAAAAC GTGGGGGCGG GGGGGGGGCG GGAAATCGGT CAGCTTTAGG
  GCTGTTCTTA ACAGTGTTGG ATGTTATTCC CATTTCACAG ATGAGGAATA ATTTCCGGGA
  GAACTGATCT TCATTCTGAT TTATTTAGAG GCAGCTGGAG CCCCTACTTT CTGAGAAAAC
  TTTCACCTCT ACCTGGGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136852128	ENSMUSSNP5156860	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323137463	CHEV_9_99777958	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51759078					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1069 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	815 bp downstream
Rr685463	regulatory region 685463	1811 bp distal
Rr685464	regulatory region 685464	1380 bp distal
Rr685465	regulatory region 685465	879 bp distal
Rr685466	regulatory region 685466	244 bp proximal
Sox14	SRY (sex determining region Y)-box 14	1369 bp upstream
Tssr91083	transcription start site region 91083	1346 bp upstream
Tssr91084	transcription start site region 91084	1327 bp upstream